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Useful Links

Protein Identification & Characterisation

Lutefisk97
Rich Johnson's de novo sequence program
MassSearch
Computational Biochemistry Research Group, ETH, Zurich
(e)Mowse
The original Mowse was developed at the Imperial Cancer Research Fund, London, but has now disappeared from the web
MultiIdent, PeptIdent, and TagIdent
Swiss Institute of Bioinformatics, Geneva
PepNovo
De novo sequence interpretation from UCSD
PeptideSearch
Protein and Peptide Group, EMBL, Heidelberg
Protein Prospector
Mass Spectrometry Facility, UCSF, San Francisco
Prowl
Rockefeller University, New York
Sashimi / Trans-Proteomic Pipeline
Seattle Proteome Center proteomics tools
SearchXLinks
Analysis of cross-linked proteins from the Centre of Advanced European Studies and Research.
Sequest
Scripps Research Institute, La Jolla

Tools

NCBI Taxonomy Homepage
How many legs does it have?
PubMed (free Medline from NCBI)
Where possible, literature references on this site are hot-linked to PubMed
GPMAW
Peter Højrup's useful ready reckoner for molecular weights: General Protein / Mass Analysis for Windows

Resources

Molecular Biology Journals
Comprehensive list of bio-journals. Excellent links to on-line editions, publisher's web sites, etc.
Sci.techniques.mass-spec Newsgroup
Home page & archives for the sci.techniques.mass-spec newsgroup.
spectroscopyNOW.com from Wiley
Formerly Base Peak, formerly Murray's Mass Spectrometry Links.
On-line Sequence Analysis Tools
An exceptional collection of links from L'Atelier BioInformatique de Marseille.
CMS Molecular Biology Resource
Christopher Smith's comprehensive collection of links organised by analytical function
Proteome Commons
Open source proteomics software archive
SPS Digest
Swiss Proteomics Society current awareness service

Fun

The Protein Colourer
And why not?
Genetic Music
Musical sequences, literally
Genome Web
Proteomics and bioinformatics news.
 
 
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